@article {2019|2079,
	title = {Molecular Graphics: Bridging Structural Biologists and Computer Scientists.},
	journal = {Structure},
	volume = {27},
	year = {2019},
	month = {2019 11 05},
	pages = {1617-1623},
	abstract = {<p>Visualization of molecular structures is one of the most common tasks carried out by structural biologists, typically using software, such as Chimera, COOT, PyMOL, or VMD. In this Perspective article, we outline how past developments in computer graphics and data visualization have expanded the understanding of biomolecular function, and we summarize recent advances that promise to further transform structural biology. We also highlight how progress in molecular graphics has been impeded by communication barriers between two communities: the computer scientists driving these advances, and the structural and computational biologists who stand to benefit. By pointing to canonical papers and explaining technical progress underlying new graphical developments in simple terms, we aim to improve communication between these communities; this, in turn, would help shape future developments in molecular graphics.</p>
},
	issn = {1878-4186},
	doi = {10.1016/j.str.2019.09.001},
	author = {Martinez, Xavier and Krone, Michael and Alharbi, Naif and Rose, Alexander S and Laramee, Robert S and O{\textquoteright}Donoghue, Sean and Marc Baaden and Chavent, Matthieu}
}
@conference {2019|2099,
	title = {QuickSES: A Library for Fast Computation of Solvent Excluded Surfaces},
	booktitle = {Workshop on Molecular Graphics and Visual Analysis of Molecular Data},
	year = {2019},
	publisher = {The Eurographics Association},
	organization = {The Eurographics Association},
	isbn = {978-3-03868-085-7},
	doi = {10.2312/molva.20191095},
	author = {Martinez, Xavier and Krone, Michael and Marc Baaden},
	editor = {Byska, Jan and Krone, Michael and Sommer, Bj{\"o}rn}
}
@article {2018|2088,
	title = {From Virtual Reality to Immersive Analytics in Bioinformatics.},
	journal = {J Integr Bioinform},
	volume = {15},
	year = {2018},
	month = {2018 Jul 09},
	abstract = {<p>Bioinformatics-related research produces huge heterogeneous amounts of data. This wealth of information includes data describing metabolic mechanisms and pathways, proteomics, transcriptomics, and metabolomics. Often, the visualization and exploration of related structural - usually molecular - data plays an important role in the aforementioned contexts. For decades, virtual reality (VR)-related technologies were developed and applied to Bioinformatics problems. Often, these approaches provide \&quot;just\&quot; visual support of the analysis, e.g. in the case of exploring and interacting with a protein on a 3D monitor and compatible interaction hardware. Moreover, in the past these approaches were limited to cost-intensive professional visualization facilities. The advent of new affordable, and often mobile technologies, provides high potential for using similar approaches on a regular basis for daily research. Visual Analytics is successfully being used for several years to analyze complex and heterogeneous datasets. Immersive Analytics combines these approaches now with new immersive and interactive technologies. This publication provides a short overview of related technologies, their history and Bioinformatics-related approaches. Six new applications on the path from VR to Immersive Analytics are being introduced and discussed.</p>
},
	keywords = {Computer Graphics, Imaging, Three-Dimensional, Molecular Conformation, Proteins, Software, User-Computer Interface, Virtual Reality},
	issn = {1613-4516},
	doi = {10.1515/jib-2018-0043},
	author = {Sommer, Bj{\"o}rn and Marc Baaden and Krone, Michael and Woods, Andrew}
}
@conference {2017|2101,
	title = {Molecular Visualization of Computational Biology Data: A Survey of Surveys},
	booktitle = {EuroVis 2017 - Short Papers},
	year = {2017},
	publisher = {The Eurographics Association},
	organization = {The Eurographics Association},
	isbn = {978-3-03868-043-7},
	doi = {10.2312/eurovisshort.20171146},
	author = {Alharbi, Naif and Alharbi, Mohammad and Martinez, Xavier and Krone, Michael and Rose, Alexander S. and Marc Baaden and Laramee, Robert S. and Chavent, Matthieu},
	editor = {Barbora Kozlikova and Tobias Schreck and Thomas Wischgoll}
}
@conference {2015|1408,
	title = {Visualization of Biomolecular Structures: State of the Art},
	booktitle = {Eurographics Conference on Visualization (EuroVis) - STARs},
	year = {2015},
	publisher = {The Eurographics Association},
	organization = {The Eurographics Association},
	author = {Kozlikova, Barbora and Krone, Michael and Lindow, Norbert and Falk, Martin and Marc Baaden and Baum, Daniel and Viola, Ivan and Parulek, Julius and Hege, Hans-Christian},
	editor = {R. Borgo and F. Ganovelli and I. Viola}
}
