@article {2011|1473,
	title = {Coherent vibrational energy transfer along a peptide helix},
	journal = {J. Chem. Phys.},
	volume = {134},
	number = {12},
	year = {2011},
	month = {mar},
	author = {Kobus, Maja and Phuong Hoang Nguyen and Stock, Gerhard}
}
@article {2011|1487,
	title = {Real Time Observation of Ultrafast Peptide Conformational Dynamics: Molecular Dynamics Simulation vs Infrared Experiment},
	journal = {J. Phys. Chem. B},
	volume = {115},
	number = {44},
	year = {2011},
	month = {nov},
	pages = {13084{\textendash}13092},
	author = {Phuong H. Nguyen and Staudt, Heike and Wachtveitl, Josef and Stock, Gerhard}
}
@article {2011|1474,
	title = {Simulation of transient infrared spectra of a photoswitchable peptide},
	journal = {J. Chem. Phys.},
	volume = {135},
	number = {12},
	year = {2011},
	month = {dec},
	author = {Kobus, Maja and Lieder, Martin and Phuong Hoang Nguyen and Stock, Gerhard}
}
@article {2010|1470,
	title = {Infrared signatures of the peptide dynamical transition: A molecular dynamics simulation study},
	journal = {J. Chem. Phys.},
	volume = {133},
	number = {3},
	year = {2010},
	month = {jul},
	author = {Kobus, Maja and Phuong Hoang Nguyen and Stock, Gerhard}
}
@article {2010|1472,
	title = {Nonequilibrium molecular dynamics simulation of the energy transport through a peptide helix},
	journal = {J. Chem. Phys.},
	volume = {132},
	number = {2},
	year = {2010},
	month = {jan},
	author = {Phuong Hoang Nguyen and Park, Sang-Min and Stock, Gerhard}
}
@article {2009|2018,
	title = {Energy Flow and Long-Range Correlations in Guanine-Binding Riboswitch: A Nonequilibrium Molecular Dynamics Study},
	journal = {J. Phys. Chem. B},
	volume = {113},
	number = {27},
	year = {2009},
	month = {jul},
	pages = {9340{\textendash}9347},
	keywords = {Binding Sites, Computer Simulation, Energy Transfer, Guanine, Ligands, Models, Molecular, Nucleic Acid Conformation, RNA, Temperature},
	doi = {10.1021/jp902013s},
	author = {Phuong Hoang Nguyen and Philippe Derreumaux and Stock, Gerhard}
}
@article {2009|1486,
	title = {Free-Energy Landscape of RNA Hairpins Constructed via Dihedral Angle Principal Component Analysis},
	journal = {J. Phys. Chem. B},
	volume = {113},
	number = {52},
	year = {2009},
	month = {dec},
	pages = {16660{\textendash}16668},
	author = {Riccardi, Laura and Phuong Hoang Nguyen and Stock, Gerhard}
}
@article {2009|1469,
	title = {Molecular dynamics simulation of cooling: Heat transfer from a photoexcited peptide to the solvent},
	journal = {J. Chem. Phys.},
	volume = {131},
	number = {18},
	year = {2009},
	month = {nov},
	author = {Park, Sang-Min and Phuong Hoang Nguyen and Stock, Gerhard}
}
@article {2008|1468,
	title = {Construction of the free energy landscape of biomolecules via dihedral angle principal component analysis},
	journal = {J. Chem. Phys.},
	volume = {128},
	number = {24},
	year = {2008},
	month = {jun},
	author = {Altis, Alexandros and Otten, Moritz and Phuong Hoang Nguyen and Hegger, Rainer and Stock, Gerhard}
}
@article {2008|1485,
	title = {Energy transport in peptide helices: A comparison between high- and low-energy excitations},
	journal = {J. Phys. Chem. B},
	volume = {112},
	number = {30},
	year = {2008},
	month = {jul},
	pages = {9091{\textendash}9099},
	author = {Backus, Ellen H. G. and Phuong Hoang Nguyen and Botan, Virgiliu and Pfister, Rolf and Moretto, Alessandro and Crisma, Marco and Toniolo, Claudio and Stock, Gerhard and Hamm, Peter}
}
@article {2008|1397,
	title = {Nonadiabatic vibrational dynamics and spectroscopy of peptides: A quantum-classical description},
	journal = {Chem. Phys.},
	volume = {347},
	number = {1-3},
	year = {2008},
	month = {may},
	pages = {208{\textendash}217},
	author = {Kobus, Maja and Gorbunov, Roman D. and Phuong Hoang Nguyen and Stock, Gerhard}
}
@article {2008|1484,
	title = {Structural Flexibility of a Helical Peptide Regulates Vibrational Energy Transport Properties},
	journal = {J. Phys. Chem. B},
	volume = {112},
	number = {48},
	year = {2008},
	month = {dec},
	pages = {15487{\textendash}15492},
	author = {Backus, Ellen H. G. and Phuong Hoang Nguyen and Botan, Virgiliu and Moretto, Alessandro and Crisma, Marco and Toniolo, Claudio and Zerbe, Oliver and Stock, Gerhard and Hamm, Peter}
}
@article {2007,
	title = {Dihedral angle principal component analysis of molecular dynamics simulations},
	journal = {J. Chem. Phys.},
	volume = {126},
	number = {24},
	year = {2007},
	month = {jun},
	author = {Altis, Alexandros and Phuong Hoang Nguyen and Hegger, Rainer and Stock, Gerhard}
}
@article {2007|1534,
	title = {Energy transport in peptide helices},
	journal = {Proc. Natl. Acad. Sci. U.s.a.},
	volume = {104},
	number = {31},
	year = {2007},
	month = {jul},
	pages = {12749{\textendash}12754},
	author = {Botan, Virgiliu and Backus, Ellen H. G. and Pfister, Rolf and Moretto, Alessandro and Crisma, Marco and Toniolo, Claudio and Phuong Hoang Nguyen and Stock, Gerhard and Hamm, Peter}
}
@article {2007|1522,
	title = {How complex is the dynamics of peptide folding?},
	journal = {Phys. Rev. Lett.},
	volume = {98},
	number = {2},
	year = {2007},
	month = {jan},
	author = {Hegger, Rainer and Altis, Alexandros and Phuong Hoang Nguyen and Stock, Gerhard}
}
@article {2007|1535,
	title = {Monomer adds to preformed structured oligomers of A beta-peptides by a two-stage dock-lock mechanism},
	journal = {Proc. Natl. Acad. Sci. U.s.a.},
	volume = {104},
	number = {1},
	year = {2007},
	month = {jan},
	pages = {111{\textendash}116},
	author = {Phuong Hoang Nguyen and Li, Mai Suan and Stock, Gerhard and Straub, John E. and Thirumalai, D.}
}
@article {2007|1467,
	title = {Quantum-classical description of the amide I vibrational spectrum of trialanine},
	journal = {J. Chem. Phys.},
	volume = {126},
	number = {5},
	year = {2007},
	month = {feb},
	author = {Gorbunov, Roman D. and Phuong Hoang Nguyen and Kobus, Maja and Stock, Gerhard}
}
@article {2007|1489,
	title = {Structure and dynamics of the homologous series of alanine peptides: A joint molecular dynamics/NMR study},
	journal = {J. Am. Chem. Soc.},
	volume = {129},
	number = {5},
	year = {2007},
	month = {feb},
	pages = {1179{\textendash}1189},
	author = {Graf, Juergen and Phuong Hoang Nguyen and Stock, Gerhard and Schwalbe, Harald}
}
@article {2006|1389,
	title = {Photoinduced conformational dynamics of a photoswitchable peptide: A nonequilibrium molecular dynamics simulation study},
	journal = {Biophys. J.},
	volume = {91},
	number = {4},
	year = {2006},
	month = {aug},
	pages = {1224{\textendash}1234},
	author = {Phuong Hoang Nguyen and Gorbunov, Roman D. and Stock, Gerhard}
}
